This is an online and free textbook that covers the essential Bash scripting skills you’ll need to do execute work on the DNAnexus cloud platform.
Links
Learning Objectives
- Apply bash scripting to your own work
- Articulate basic Cloud Computing concepts that apply to the DNAnexus platform
- Leverage bash scripting and the dx-toolkit to execute jobs on the DNAnexus platform
- Execute batch processing of multiple files in a project on the DNAnexus platform
- Monitor, profile, terminate and retry jobs to optimize costs
- Manage software dependencies reproducibly using container-based technologies such as Docker
Citation
BibTeX citation:
@online{laderas,
author = {Laderas, Ted},
title = {Bash for {Bioinformatics}},
url = {https://laderast.github.io//edu/2022-10-10-bash-for-bioinformatics},
langid = {en}
}
For attribution, please cite this work as:
Laderas, Ted. n.d. “Bash for Bioinformatics.” https://laderast.github.io//edu/2022-10-10-bash-for-bioinformatics.