UK Biobank Webinar: Using JupyterLab – Ted Laderas, PhD

Author

Anastazie Sedlakova

Published

October 19, 2021

Two part webinar on utilizing JupyterLab on the DNAnexus platform.

Learning Objectives (Part 1)

Explain the relationship between JupyterLab and a UKB RAP project
Select the appropriate JupyterLab instance given your workflow requirements
Access files and Jupyter Notebooks from a project into the JupyterLab environment
Run a Jupyter Notebook in the JupyterLab environment and upload results back into the project
Utilize and install software dependencies into the JupyterLab environment

Video Part 1: JupyterLab Basics

Learning Objectives (Part 1)

Explain the difference between a single JupyterLab instance and a Spark JupyterLab cluster
Explain the basic structure of the RAP Dataset
Access and manipulate RAP Data and cohorts using the dxdata package on Spark JupyterLab
Articulate possible further Spark enabled analyses

Part 2: Using Spark JupyterLab to access phenotype data

Citation

BibTeX citation:

@online{laderas2021,
  author = {Laderas, Ted and Sedlakova, Anastazie},
  title = {UK {Biobank} {Webinar:} {Using} {JupyterLab}},
  date = {2021-10-19},
  url = {https://laderast.github.io/edu/2021-10-19-Jupyter-Notebooks/},
  langid = {en}
}

For attribution, please cite this work as:

Laderas, Ted, and Anastazie Sedlakova. 2021. “UK Biobank Webinar: Using JupyterLab.” October 19, 2021. https://laderast.github.io/edu/2021-10-19-Jupyter-Notebooks/.