Two part webinar on utilizing JupyterLab on the DNAnexus platform.
Learning Objectives (Part 1)
- Explain the relationship between JupyterLab and a UKB RAP project
- Select the appropriate JupyterLab instance given your workflow requirements
- Access files and Jupyter Notebooks from a project into the JupyterLab environment
- Run a Jupyter Notebook in the JupyterLab environment and upload results back into the project
- Utilize and install software dependencies into the JupyterLab environment
Video Part 1: JupyterLab Basics
Learning Objectives (Part 1)
- Explain the difference between a single JupyterLab instance and a Spark JupyterLab cluster
- Explain the basic structure of the RAP Dataset
- Access and manipulate RAP Data and cohorts using the dxdata package on Spark JupyterLab
- Articulate possible further Spark enabled analyses
Part 2: Using Spark JupyterLab to access phenotype data
Citation
BibTeX citation:
@online{laderas2021,
author = {Laderas, Ted and Sedlakova, Anastazie},
title = {UK {Biobank} {Webinar:} {Using} {JupyterLab}},
date = {2021-10-19},
url = {https://laderast.github.io//edu/2021-10-19-Jupyter-Notebooks},
langid = {en}
}
For attribution, please cite this work as:
Laderas, Ted, and Anastazie Sedlakova. 2021. “UK Biobank Webinar:
Using JupyterLab.” October 19, 2021. https://laderast.github.io//edu/2021-10-19-Jupyter-Notebooks.