All functions
|
buildMedianTable
|
Title |
buildSampledDataList
|
buildSampledDataList - deprecated |
checkIntegrity
|
Check integrity of data objects |
coexpressionPlot
|
Title |
coexpressionPlotUI
|
Title |
commonDataObj
|
SuperClass for other DataObj Classes |
dotPlot
|
Title |
dotPlotOutput
|
Percent Plot Module |
dotplotOutputFromGO
|
Title |
dotPlotUI
|
Title |
dotPlotUIFromGO
|
Title |
findMedianValues
|
Find Median Values of Melted Data Frame |
findPointsGeomTile
|
Finds line in file for geom_tile() heatmaps |
flagModuleOutput
|
Title |
flagModuleUI
|
Title |
gatingModuleGGOutput
|
Output module for popHeatmapGG |
gatingModuleOutputGGFromGO
|
Title |
gatingModuleUI
|
Title |
gatingModuleUIFromGO
|
Title |
gatingObj
|
R6 object for Storing Gating Results and population percentages |
getAllPopulationMedians
|
Title |
getPopulationsAndZscores
|
Title |
GOFromGatingSet
|
Build a gatingObj from a gatingSet |
hello
|
Hello, World! |
makeAnnotationReactive
|
Title |
makePopulationIdentifier
|
Title |
PEOFromGatingSet
|
Build a populationExpressionObj from a GatingSet |
plotAllPopulations
|
Plot all Populations |
plotAllPopulationsOld
|
Plot all Populations |
plotHierarchy
|
Title |
popHeatmap
|
Title |
popHeatmapGG
|
Title |
qcFlowObj
|
R6 object for Quality Control of flow data |
qcHeatmapGG
|
Generates a QC heatmap using data generated by module |
qcHeatmapPlot
|
Generates a heatmap using ggvis (deprecated) |
qcModuleFromQCO
|
Title |
qcModuleOutput
|
Title |
qcModuleUI
|
Title |
qcModuleUIFromQCO
|
Title |
QCOFromGatingSet
|
Build a qcFlowObj from flowSet or gatingSet |
reconcileData
|
Reconcile annotation and data tables in object |
reconcileDataAndAnnotation
|
Title |
returnMeltedData
|
Title |
returnMeltedDataFromGS
|
Returns a long data frame with population/marker data |
subsetModule
|
Title |
subsetModuleDCO
|
Title |
subsetModuleUI
|
Title |
subsetModuleUICDO
|
Title |
violinOutput
|
Title |
violinOutputFromPEO
|
Title |
violinPlot
|
Title |
violinUI
|
Title |
waterfallOutput
|
Waterfall plot output module |
waterfallOutputFromGO
|
Title |
waterfallOutputUI
|
Title |
waterfallOutputUIfromGO
|
Title |
waterfallPlot
|
Waterfall graphic expects a sorted table by population percentage |