All functions

buildMedianTable

Title

buildSampledDataList

buildSampledDataList - deprecated

checkIntegrity

Check integrity of data objects

coexpressionPlot

Title

coexpressionPlotUI

Title

commonDataObj

SuperClass for other DataObj Classes

dotPlot

Title

dotPlotOutput

Percent Plot Module

dotplotOutputFromGO

Title

dotPlotUI

Title

dotPlotUIFromGO

Title

findMedianValues

Find Median Values of Melted Data Frame

findPointsGeomTile

Finds line in file for geom_tile() heatmaps

flagModuleOutput

Title

flagModuleUI

Title

gatingModuleGGOutput

Output module for popHeatmapGG

gatingModuleOutputGGFromGO

Title

gatingModuleUI

Title

gatingModuleUIFromGO

Title

gatingObj

R6 object for Storing Gating Results and population percentages

getAllPopulationMedians

Title

getPopulationsAndZscores

Title

GOFromGatingSet

Build a gatingObj from a gatingSet

hello

Hello, World!

makeAnnotationReactive

Title

makePopulationIdentifier

Title

PEOFromGatingSet

Build a populationExpressionObj from a GatingSet

plotAllPopulations

Plot all Populations

plotAllPopulationsOld

Plot all Populations

plotHierarchy

Title

popHeatmap

Title

popHeatmapGG

Title

qcFlowObj

R6 object for Quality Control of flow data

qcHeatmapGG

Generates a QC heatmap using data generated by module

qcHeatmapPlot

Generates a heatmap using ggvis (deprecated)

qcModuleFromQCO

Title

qcModuleOutput

Title

qcModuleUI

Title

qcModuleUIFromQCO

Title

QCOFromGatingSet

Build a qcFlowObj from flowSet or gatingSet

reconcileData

Reconcile annotation and data tables in object

reconcileDataAndAnnotation

Title

returnMeltedData

Title

returnMeltedDataFromGS

Returns a long data frame with population/marker data

subsetModule

Title

subsetModuleDCO

Title

subsetModuleUI

Title

subsetModuleUICDO

Title

violinOutput

Title

violinOutputFromPEO

Title

violinPlot

Title

violinUI

Title

waterfallOutput

Waterfall plot output module

waterfallOutputFromGO

Title

waterfallOutputUI

Title

waterfallOutputUIfromGO

Title

waterfallPlot

Waterfall graphic expects a sorted table by population percentage