All functions
|
|
buildMedianTable
|
Title |
|
buildSampledDataList
|
buildSampledDataList - deprecated |
|
checkIntegrity
|
Check integrity of data objects |
|
coexpressionPlot
|
Title |
|
coexpressionPlotUI
|
Title |
|
commonDataObj
|
SuperClass for other DataObj Classes |
|
dotPlot
|
Title |
|
dotPlotOutput
|
Percent Plot Module |
|
dotplotOutputFromGO
|
Title |
|
dotPlotUI
|
Title |
|
dotPlotUIFromGO
|
Title |
|
findMedianValues
|
Find Median Values of Melted Data Frame |
|
findPointsGeomTile
|
Finds line in file for geom_tile() heatmaps |
|
flagModuleOutput
|
Title |
|
flagModuleUI
|
Title |
|
gatingModuleGGOutput
|
Output module for popHeatmapGG |
|
gatingModuleOutputGGFromGO
|
Title |
|
gatingModuleUI
|
Title |
|
gatingModuleUIFromGO
|
Title |
|
gatingObj
|
R6 object for Storing Gating Results and population percentages |
|
getAllPopulationMedians
|
Title |
|
getPopulationsAndZscores
|
Title |
|
GOFromGatingSet
|
Build a gatingObj from a gatingSet |
|
hello
|
Hello, World! |
|
makeAnnotationReactive
|
Title |
|
makePopulationIdentifier
|
Title |
|
PEOFromGatingSet
|
Build a populationExpressionObj from a GatingSet |
|
plotAllPopulations
|
Plot all Populations |
|
plotAllPopulationsOld
|
Plot all Populations |
|
plotHierarchy
|
Title |
|
popHeatmap
|
Title |
|
popHeatmapGG
|
Title |
|
qcFlowObj
|
R6 object for Quality Control of flow data |
|
qcHeatmapGG
|
Generates a QC heatmap using data generated by module |
|
qcHeatmapPlot
|
Generates a heatmap using ggvis (deprecated) |
|
qcModuleFromQCO
|
Title |
|
qcModuleOutput
|
Title |
|
qcModuleUI
|
Title |
|
qcModuleUIFromQCO
|
Title |
|
QCOFromGatingSet
|
Build a qcFlowObj from flowSet or gatingSet |
|
reconcileData
|
Reconcile annotation and data tables in object |
|
reconcileDataAndAnnotation
|
Title |
|
returnMeltedData
|
Title |
|
returnMeltedDataFromGS
|
Returns a long data frame with population/marker data |
|
subsetModule
|
Title |
|
subsetModuleDCO
|
Title |
|
subsetModuleUI
|
Title |
|
subsetModuleUICDO
|
Title |
|
violinOutput
|
Title |
|
violinOutputFromPEO
|
Title |
|
violinPlot
|
Title |
|
violinUI
|
Title |
|
waterfallOutput
|
Waterfall plot output module |
|
waterfallOutputFromGO
|
Title |
|
waterfallOutputUI
|
Title |
|
waterfallOutputUIfromGO
|
Title |
|
waterfallPlot
|
Waterfall graphic expects a sorted table by population percentage |