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The cat's out of the bag - this is the first draft of my book called "Bash for Bioinformatics". laderast.github.io/bash_for_bioinformatics/ If you are new to the @dnanexus platform, this is a gentle introduction to the bash scripting you need to run jobs on the platform.
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@dnanexus Though I am a trainer for @dnanexus, this is written from the perspective of me as a user of the platform. Hopefully it helps you get started. There was a lot of bash scripting knowledge that I had to compile from a lot of sources.